Comments for Xfam Blog

Comment on Pfam release 24.0 by jun

jun — Sat, 14 Nov 2009 13:55:51 +0000

I am using hmmer.pm to parse hmmpfam results. Is there any substitue or other parser for hmmscan results?

Comment on Pfam release 24.0 by Cryptogenomicon » Summary of known bugs (so far) in 3.0b2

Cryptogenomicon » Summary of known bugs (so far) in 3.0b2 — Thu, 29 Oct 2009 14:27:01 +0000

[...] the release of Pfam 24, HMMER3 beta test code has been pressed into service just a bit earlier than we’re [...]

Comment on Imminent Release of Pfam 24.0 by Pfam release 24.0 « Xfam Blog

Pfam release 24.0 « Xfam Blog — Wed, 14 Oct 2009 08:03:32 +0000

[...] Imminent Release of Pfam 24.0 [...]

Comment on pfam_scan.pl – part II by johntate

johntate — Tue, 06 Oct 2009 15:31:12 +0000

http://pfam.sanger.ac.uk/search/sequence/results?jobId=fba067b2-05d3-4c0f-89ad-2d6b08aadae6

Comment on pfam_scan.pl – part II by HCPro

HCPro — Mon, 05 Oct 2009 06:32:37 +0000

sdagssfwkgfdrqfiatrdrpknaheckatinveecgemaaiinqllfpmwkitctqcgellemlsqeeelesfrrkrnqlasklsslhnkfpyvdhflnryensldqmntnfdahkqiaqiiggrkeipfsnlgrlnelliksdklvsedfyemsqclleltrwhknrsdsfkkgevhhfrnkisgkaqfnfslmcdnqldkngnfvwgergyhakrffsnffekvdstdgykkhimrvnpngtrqtaigklilstdpstlrqqmkgnpitrvpvgkhctskrddcyvypaccvtmedgtplfsdikmptknhlvignsgdpkyvdvpssssdmivakegycylniflamllnvnesesksftkkvrdiivprlgqwpslidvatecyflsafhpetknaelprilvdhtskcmhvidsygsldtqfhvlkantvsqlikfadddldsemkhylvg

Comment on pfam_scan.pl by jainamistry

jainamistry — Tue, 08 Sep 2009 13:15:09 +0000

Hi Peter,

Thanks for the offer. We had a fantastic response to our plea for testers, so we’re not looking for any more at the moment.

We’ve actually just added some new features to the script, and we’ll be releasing it to our volunteers for the second phase of testing shortly. We will write another blog post about the improved version, so you will be able to keep up to date with our progress.

Best wishes,

Jaina

Comment on pfam_scan.pl by Peter

Peter — Fri, 04 Sep 2009 11:19:09 +0000

Hi,

I’m also curious about trying out HMMER3 with the new PFAM models. Are you still looking for more testers?

Peter

Comment on pfam_scan.pl by johntate

johntate — Fri, 04 Sep 2009 09:33:41 +0000

The best way to get started is to download the "pfam_scan.pl" script and check the documentation there. You can see it by running "perldoc pfam_scan.pl". If you have problems setting up or running the script, you can email our helpdesk and we'll try to get you going. You can find the address at the bottom of every page in the Pfam site.

Comment on pfam_scan.pl by timsong

timsong — Thu, 03 Sep 2009 18:51:12 +0000

Hey,
I am a new to the whole pfam_scan scene and I was just wondering if anyone could help me out getting the script to work? I just recently began to use linux (ubuntu) and it is my first time working with perl.

Comment on pfam_scan.pl by johntate

johntate — Wed, 02 Sep 2009 08:40:38 +0000

http://pfam.sanger.ac.uk/search/sequence/results?jobId=f69545db-d7bf-4d10-a168-5154dc13af32